PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AL_635989DBF.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 809aa    MW: 92215.5 Da    PI: 5.8372
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AL_635989DBF.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.91.9e-1957143190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 
                            +fY +Y+ + GF ++++++++   +g  +++tf Csk g+++ ++    ++  ++  t+tgCkak+ vk  + +++wev+ leleHnH
  Traes_7AL_635989DBF.1  57 QFYVAYGCHSGFGITRRSNNTF--DGFRYRSTFICSKGGQSRLRSGV--TRPARKRGTKTGCKAKIIVKDAHfQNRWEVIVLELEHNH 140
                            6****************99988..9999**************99877..77788889***************9*************** PP

                   FAR1  88 ela 90 
                            +l 
  Traes_7AL_635989DBF.1 141 PLD 143
                            *97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-1757144IPR004330FAR1 DNA binding domain
PfamPF105519.4E-20263353IPR018289MULE transposase domain
PROSITE profilePS509669.557541577IPR007527Zinc finger, SWIM-type
PfamPF044346.7E-8541573IPR007527Zinc finger, SWIM-type
SMARTSM005753.9E-5552579IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 809 aa     Download sequence    Send to blast
MEEEGYSTES SNEGDVQEDG DKEKSLAEGD VFKPVDMDPE WIPKVGMVFD SEEDAFQFYV  60
AYGCHSGFGI TRRSNNTFDG FRYRSTFICS KGGQSRLRSG VTRPARKRGT KTGCKAKIIV  120
KDAHFQNRWE VIVLELEHNH PLDPGSVKYK KHLENIPFSL NPPRLSEAPQ SSSVVGHSSS  180
FGDSGIPSSA QIEIKTKIDR NRKLKLAEGD LEALVSFFND MQDRNPCFFH SLDMNEQGQL  240
RNVFWADAKS RSSYNYFGDV VAINVTNFSD QYDIQFVSFV GTNHHAQPLL LGCGLLAGRS  300
LGAYVWLFDT WLRCMNATSP PSIITNYCHD VAIAVKKVFP NSRHRFCLRH ILNELPEKLA  360
GMEKKDEVIS TFSTLAYDSV TTLDFDKEWQ EMTHQFQLEG NEWLSKLYEV RAQWAPAYVK  420
DFFWAGMSVT DRTDSATDYF DGWLTSDTSV KMFVEQYEAA VRTKLEKETY EDLHSSQMRP  480
QLMTGLPVEE QAAKMYTMEI FQTFLNELGR SFHCNYSILD RSDSVVTYIV SEHVNQTKVD  540
YKVAYDNAED DIWCFCRLFQ FKGILCRHAL TVLRQELVPM IPSKYIIHRW CKDCKLTCSS  600
MSRDVSLSSQ ELGGYDDLYK LGHQYFAEVV ELGSVNSESK DYALSVMREI RDKVISYEKS  660
LRDQRVDSQV STANFAYNPV NEDFTDDALP ISLSTKGWDL MQGQSKRSRK KKLTTPTVLD  720
TLKKKTKRAY NKRRNATANN LCTTVTATDS ITESANVQED QVNEGWPLTS SGAPDTFPYG  780
VETISFDLTQ YNNAPSFHWP ESSSRSQLQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3724730.0AK372473.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3002N21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957762.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBLW5H8E30.0W5H8E3_WHEAT; Uncharacterized protein
STRINGMLOC_56322.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-110FAR1-related sequence 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]